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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28242748_28244741_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
28242748 - 28244741
Intron Length:
1994

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCAGCCAGG
5'SS Class:
weak_major
3'SS Sequence:
CCCCGGTGCTGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATCCCAA
U12 Branch Point Sequence:
AAATCTGGGATG
Flanking Amino Acid:
QGSLGACKGLRAPPQAADKS
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.5
0.22
1.3
50.5
45.8
Major BPS
54.3
0.11
1.2
64.5
33.7
Major PPT
45.1
-0.2
1.7
48
39.3
Minor 5ss
32.7
-2
4.1
45
45
Minor BPS
40.9
-0.8
2
42.38
36.6

Associated Gene:

Gene:
PLCD4
Ensembl Gene ID:
ENSAPLG00000025810
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029743
28237631 - 28244819
7189