Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28262420_28262549_F

Intron Information:

Intron Rank:

149281

Intron Class:

major

Intron Phase:

Intron Coordinates:

28262420 - 28262549

Intron Length:

130

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGCGGG

5'SS Class:

major

3'SS Sequence:

GTCTCCCCCCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTCTGAG

U12 Branch Point Sequence:

CCCCTCTGAGCC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.52

56.9

42.6

Major BPS

55.1

0.13

1.5

54.7

43.1

Major PPT

71.6

0.49

0.8

62.1

34.7

Minor 5ss

-2.1

3.3

37.7

41.5

Minor BPS

44.9

-0.4

1.7

47.77

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030279

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040887

28261863 - 28263600

1738