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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28265031_28266131_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28265031 - 28266131
Intron Length:
1101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAATCAC
U12 Branch Point Sequence:
TGGGAATCACCC
Flanking Amino Acid:
DVVIGKVFMQEFKEGRRASH
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71
34.5
Major BPS
52.8
0.07
1.2
57.7
39
Major PPT
86.8
0.83
0.7
85.2
29.6
Minor 5ss
34.6
-1.7
3.5
45.7
49.5
Minor BPS
37.7
-0.9
2
45.55
42.5

Associated Gene:

Gene:
ARPC2
Ensembl Gene ID:
ENSAPLG00000004251
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004374
28263621 - 28271214
7594