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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28267466_28269384_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28267466 - 28269384
Intron Length:
1919

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTCCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
AACTTCTGAAAA
Flanking Amino Acid:
KELQEHGADEVLKKVYGSYL
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
80.3
0.68
0.8
73.8
36.2
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
54
0.12
1.5
61.03
38.4

Associated Gene:

Gene:
ARPC2
Ensembl Gene ID:
ENSAPLG00000004251
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004374
28263621 - 28271214
7594