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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28269498_28270462_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28269498 - 28270462
Intron Length:
965

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTTGCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAA
U12 Branch Point Sequence:
AGTTCCTTACGT
Flanking Amino Acid:
KPEAVEVTFADFDGVLYHIS
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
35.5
Major BPS
73.4
0.58
0.9
75.3
29.7
Major PPT
81.4
0.71
0.8
75.6
32.9
Minor 5ss
39
-1.2
3.4
56.7
47.6
Minor BPS
61.5
0.44
1.9
79.07
42.9

Associated Gene:

Gene:
ARPC2
Ensembl Gene ID:
ENSAPLG00000004251
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004374
28263621 - 28271214
7594