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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28270498_28271119_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28270498 - 28271119
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTTTCTTTCCA
Flanking Amino Acid:
HKSLSGITERRNKPEAVEVT
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
75.1
41.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
95.4
1.02
0.6
88.7
28.3
Minor 5ss
34.5
-1.8
2.8
42.5
44.3
Minor BPS
46.8
-0.2
3.6
78.67
37.8

Associated Gene:

Gene:
ARPC2
Ensembl Gene ID:
ENSAPLG00000004251
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004374
28263621 - 28271214
7594