Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28283399_28284792_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

28283399 - 28284792

Intron Length:

1394

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

TGTCCGCCCGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCCTCAT

U12 Branch Point Sequence:

ATTTCCCCCTCT

Flanking Amino Acid:

PCAPAVNYELPSPGESITQQ

Intron Amino Acid Position:

128

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.2

0.88

0.9

34.9

Major BPS

0.5

1.1

71.2

35.2

Major PPT

69.2

0.43

0.9

34.7

Minor 5ss

34.1

-1.8

3.1

41.9

38.9

Minor BPS

36.2

-0.9

3.7

71.6

44.9

Associated Gene:

Gene:

TNS1

Ensembl Gene ID:

ENSAPLG00000025012

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045619

28280748 - 28314913

34166

ENSAPLT00000043156

28280748 - 28314913

34166

ENSAPLT00000030362

28280748 - 28314913

34166

ENSAPLT00000024108

28280748 - 28314913

34166