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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28289479_28289734_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28289479 - 28289734
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACCACG
5'SS Class:
major
3'SS Sequence:
CTCTCCCTGCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACAGAT
U12 Branch Point Sequence:
GTCTCTTTGCTC
Flanking Amino Acid:
GKEDLDEAFRDDRFPEYGKV
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.2
66.3
45.2
Major BPS
49.4
-0
1.2
46.7
38.9
Major PPT
72
0.49
0.9
65.2
36.2
Minor 5ss
45.2
-0.5
2.6
58.6
45.7
Minor BPS
43
-0.5
3.4
61.42
39

Associated Gene:

Gene:
TNS1
Ensembl Gene ID:
ENSAPLG00000025012
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039903
28280748 - 28314913
34166
ENSAPLT00000030362
28280748 - 28314913
34166
ENSAPLT00000045619
28280748 - 28314913
34166
ENSAPLT00000024108
28280748 - 28314913
34166
ENSAPLT00000043156
28280748 - 28314913
34166
ENSAPLT00000018274
28283360 - 28314913
31554
ENSAPLT00000042608
28286311 - 28314913
28603