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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28290274_28297232_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28290274 - 28297232
Intron Length:
6959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGGGCC
5'SS Class:
major
3'SS Sequence:
TCTCCCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTGAT
U12 Branch Point Sequence:
TGTTCGTTTCTC
Flanking Amino Acid:
PPLPAKHLEKEVGHTQGPLD
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.3
71
34.6
Major BPS
76.2
0.65
1
67
39.8
Major PPT
83
0.74
0.7
76.9
25
Minor 5ss
25.9
-2.8
3.3
33.7
41.8
Minor BPS
37
-1
3.8
62.91
43

Associated Gene:

Gene:
TNS1
Ensembl Gene ID:
ENSAPLG00000025012
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024108
28280748 - 28314913
34166
ENSAPLT00000043156
28280748 - 28314913
34166
ENSAPLT00000018274
28283360 - 28314913
31554
ENSAPLT00000042608
28286311 - 28314913
28603
ENSAPLT00000039903
28280748 - 28314913
34166
ENSAPLT00000030362
28280748 - 28314913
34166
ENSAPLT00000045619
28280748 - 28314913
34166