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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28298928_28300611_F

Intron Information:

Intron Rank:
16
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
28298928 - 28300611
Intron Length:
1684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACGC
5'SS Class:
major
3'SS Sequence:
GGTACGCTGGCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTTGCAC
U12 Branch Point Sequence:
CCTCCTTGCACC
Flanking Amino Acid:
LEGLVAHRVAEYNAKLRDLN
Intron Amino Acid Position:
1091

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
60.8
44.4
Major BPS
52.8
0.07
1.4
66.7
39.9
Major PPT
57.5
0.17
1.1
50.5
43.7
Minor 5ss
30.9
-2.2
3.3
42.1
44.7
Minor BPS
46.7
-0.2
1.9
56.01
42.7

Associated Gene:

Gene:
TNS1
Ensembl Gene ID:
ENSAPLG00000025012
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042608
28286311 - 28314913
28603
ENSAPLT00000039903
28280748 - 28314913
34166
ENSAPLT00000030362
28280748 - 28314913
34166
ENSAPLT00000045619
28280748 - 28314913
34166
ENSAPLT00000043156
28280748 - 28314913
34166