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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28298928_28303079_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28298928 - 28303079
Intron Length:
4152

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACGC
5'SS Class:
major
3'SS Sequence:
TGCTTGCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAC
U12 Branch Point Sequence:
CCTCTCTCACCG
Flanking Amino Acid:
LEGLVAHRVAGVQSREKPPE
Intron Amino Acid Position:
1091

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
60.8
44.4
Major BPS
72.7
0.56
1
75
30.1
Major PPT
71.9
0.49
0.9
65.5
36.1
Minor 5ss
30.9
-2.2
3.3
42.1
44.7
Minor BPS
45.1
-0.5
1.9
48.07
45.5

Associated Gene:

Gene:
TNS1
Ensembl Gene ID:
ENSAPLG00000025012
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024108
28280748 - 28314913
34166