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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28308602_28308717_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
28308602 - 28308717
Intron Length:
116

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
CATCTCTCCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAT
U12 Branch Point Sequence:
CTCTCCCCATCT
Flanking Amino Acid:
STSSPIHSVDGASLHSYPSE
Intron Amino Acid Position:
1021

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67.1
44.6
Major BPS
59.7
0.24
1.3
68.6
38.9
Major PPT
74.3
0.55
0.8
65.6
35.7
Minor 5ss
39.3
-1.2
2.8
43.9
43.7
Minor BPS
46.9
-0.1
2.1
68.76
47.7

Associated Gene:

Gene:
TNS1
Ensembl Gene ID:
ENSAPLG00000025012
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024108
28280748 - 28314913
34166
ENSAPLT00000043156
28280748 - 28314913
34166
ENSAPLT00000018274
28283360 - 28314913
31554
ENSAPLT00000042608
28286311 - 28314913
28603
ENSAPLT00000039903
28280748 - 28314913
34166
ENSAPLT00000030362
28280748 - 28314913
34166
ENSAPLT00000045619
28280748 - 28314913
34166