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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28309590_28310520_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28309590 - 28310520
Intron Length:
931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
CCTCTCTTGATT
Flanking Amino Acid:
LPDFSKFSMPDISPETRANV
Intron Amino Acid Position:
1312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
77.5
32.9
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
86.6
0.82
0.7
81.4
23.5
Minor 5ss
32.6
-2
3.4
45.9
49.3
Minor BPS
62.5
0.47
1.3
71.41
40.3

Associated Gene:

Gene:
TNS1
Ensembl Gene ID:
ENSAPLG00000025012
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024108
28280748 - 28314913
34166
ENSAPLT00000043156
28280748 - 28314913
34166
ENSAPLT00000018274
28283360 - 28314913
31554
ENSAPLT00000042608
28286311 - 28314913
28603
ENSAPLT00000039903
28280748 - 28314913
34166
ENSAPLT00000030362
28280748 - 28314913
34166
ENSAPLT00000045619
28280748 - 28314913
34166