About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28310608_28311028_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28310608 - 28311028
Intron Length:
421

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGCGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAG
U12 Branch Point Sequence:
TTCTCTCCCACA
Flanking Amino Acid:
WYKPEISREQAIALLKDREP
Intron Amino Acid Position:
1341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
74.3
38
Major BPS
53.2
0.08
1.7
65.3
43.7
Major PPT
81.5
0.71
0.7
76.3
25.9
Minor 5ss
28.6
-2.5
2.8
33.8
41.5
Minor BPS
45.6
-0.3
2.2
63.87
42.8

Associated Gene:

Gene:
TNS1
Ensembl Gene ID:
ENSAPLG00000025012
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039903
28280748 - 28314913
34166
ENSAPLT00000030362
28280748 - 28314913
34166
ENSAPLT00000045619
28280748 - 28314913
34166
ENSAPLT00000024108
28280748 - 28314913
34166
ENSAPLT00000043156
28280748 - 28314913
34166
ENSAPLT00000018274
28283360 - 28314913
31554
ENSAPLT00000042608
28286311 - 28314913
28603