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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_283113_284431_R

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
283113 - 284431
Intron Length:
1319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
ACATCCCAATCAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
CTTTCCACATCC
Flanking Amino Acid:
VTSSRAHAKIISVDTSEALK
Intron Amino Acid Position:
627

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
87.3
27
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
59.3
0.21
1
56.8
38.1
Minor 5ss
41.1
-1
3.4
62.8
42
Minor BPS
48.8
-0.1
2.1
67.7
43.6

Associated Gene:

Gene:
AOX1
Ensembl Gene ID:
ENSAPLG00000008708
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022758
264624 - 306968
42345
ENSAPLT00000018331
263911 - 307009
43099
ENSAPLT00000009339
268146 - 306968
38823
ENSAPLT00000045156
267812 - 306968
39157
ENSAPLT00000025359
264624 - 306968
42345