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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28311999_28312286_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28311999 - 28312286
Intron Length:
288

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
CCATCTCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
GCAGCAGTAACG
Flanking Amino Acid:
LPCKLVIPDRDPMEEKKDAA
Intron Amino Acid Position:
1442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
69.3
0.44
0.8
61.5
34.7
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
42.3
-0.7
2.3
45.9
46.1

Associated Gene:

Gene:
TNS1
Ensembl Gene ID:
ENSAPLG00000025012
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030362
28280748 - 28314913
34166
ENSAPLT00000045619
28280748 - 28314913
34166
ENSAPLT00000024108
28280748 - 28314913
34166
ENSAPLT00000043156
28280748 - 28314913
34166
ENSAPLT00000018274
28283360 - 28314913
31554
ENSAPLT00000042608
28286311 - 28314913
28603
ENSAPLT00000039903
28280748 - 28314913
34166