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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28312359_28312436_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
28312359 - 28312436
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCCCAT
U12 Branch Point Sequence:
GGTGGCTGACCC
Flanking Amino Acid:
SATDLLKQGAACNVLFINSV
Intron Amino Acid Position:
1466

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74.1
38.4
Major BPS
50.9
0.02
1.3
60.4
37.5
Major PPT
87.6
0.85
0.7
80
31.9
Minor 5ss
29.2
-2.4
2.5
25
36.7
Minor BPS
42.6
-0.5
2.1
52.58
44.5

Associated Gene:

Gene:
TNS1
Ensembl Gene ID:
ENSAPLG00000025012
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024108
28280748 - 28314913
34166
ENSAPLT00000043156
28280748 - 28314913
34166
ENSAPLT00000018274
28283360 - 28314913
31554
ENSAPLT00000042608
28286311 - 28314913
28603
ENSAPLT00000039903
28280748 - 28314913
34166
ENSAPLT00000030362
28280748 - 28314913
34166
ENSAPLT00000045619
28280748 - 28314913
34166