Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28524587_28527914_F

Intron Information:

Intron Rank:

143117

Intron Class:

major

Intron Phase:

Intron Coordinates:

28524587 - 28527914

Intron Length:

3328

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGACT

5'SS Class:

strong_major

3'SS Sequence:

CTATGTTTCTCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTCTAT

U12 Branch Point Sequence:

AACACCACAATG

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.8

0.98

0.8

85.2

31.7

Major BPS

73.8

0.59

1.3

72.8

Major PPT

78.6

0.64

0.9

76.4

37.4

Minor 5ss

34.9

-1.7

3.2

49.5

46.5

Minor BPS

44.1

-0.5

1.8

45.36

40.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000027093

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031129

28524285 - 28537220

12936