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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28528009_28537181_F

Intron Information:

Intron Rank:
143118
Intron Class:
major
Intron Phase:
Intron Coordinates:
28528009 - 28537181
Intron Length:
9173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TGTTCCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
75.1
35.1
Major BPS
100
1.24
0.5
100
0
Major PPT
86.4
0.82
0.8
80.7
31.5
Minor 5ss
32.3
-2
3.1
41.7
45
Minor BPS
63
0.27
1.8
69.63
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027093
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031129
28524285 - 28537220
12936