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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28588474_28588729_F

Intron Information:

Intron Rank:
131331
Intron Class:
major
Intron Phase:
Intron Coordinates:
28588474 - 28588729
Intron Length:
256

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTGGT
5'SS Class:
major
3'SS Sequence:
TTGTCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
ATTCAAGGAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
69.2
41.7
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
88.8
0.87
0.7
84.5
30.4
Minor 5ss
33.4
-1.9
3.5
50.3
45.9
Minor BPS
40.9
-0.7
2.3
58.03
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020555
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021105
28588144 - 28590337
2194