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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28611556_28612514_R

Intron Information:

Intron Rank:
147285
Intron Class:
major
Intron Phase:
Intron Coordinates:
28611556 - 28612514
Intron Length:
959

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGGTTT
5'SS Class:
major
3'SS Sequence:
TATTTCTCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
ATGCCCATAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1.1
73.2
38.6
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
77.4
0.62
0.8
70.6
35.8
Minor 5ss
43
-0.8
3.7
63.7
42.5
Minor BPS
63.8
0.43
1.6
72.75
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026574
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030576
28610734 - 28612727
1994