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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28639314_28662748_R

Intron Information:

Intron Rank:
154414
Intron Class:
major
Intron Phase:
Intron Coordinates:
28639314 - 28662748
Intron Length:
23435

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAGT
5'SS Class:
strong_major
3'SS Sequence:
TCATCCTGCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAG
U12 Branch Point Sequence:
AAGGCTTGAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
77.9
36.7
Major BPS
66.8
0.42
1.5
75.7
36.5
Major PPT
66.6
0.37
0.9
65.6
35.8
Minor 5ss
34.5
-1.8
3.1
49.5
46.3
Minor BPS
52.9
0.07
1.5
58.66
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030619
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023578
28638756 - 28663521
24766