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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28824224_28844365_R

Intron Information:

Intron Rank:
139688
Intron Class:
major
Intron Phase:
Intron Coordinates:
28824224 - 28844365
Intron Length:
20142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ATTCATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
TTTTCCAGCAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.9
0.9
80.5
35
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
83.3
0.75
0.8
77.3
36
Minor 5ss
48
-0.2
2.5
67.3
43.8
Minor BPS
48.4
-0
2.3
79.58
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022607
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029075
28824014 - 28853755
29742