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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28880990_28881358_R

Intron Information:

Intron Rank:
136294
Intron Class:
major
Intron Phase:
Intron Coordinates:
28880990 - 28881358
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAC|GTGAGTTTG
5'SS Class:
major
3'SS Sequence:
ATTGCATTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
CAAAACAAAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.3
74.8
38.1
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
74.4
0.55
0.9
71
39.3
Minor 5ss
39.7
-1.1
2.9
48.5
41.2
Minor BPS
41.2
-0.6
2
48.49
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020747
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017655
28880953 - 28883118
2166