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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28972518_28972641_F

Intron Information:

Intron Rank:
141036
Intron Class:
major
Intron Phase:
Intron Coordinates:
28972518 - 28972641
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAGGAAGC
5'SS Class:
major
3'SS Sequence:
TCATTTTCTAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TCTTTCTGGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
62.8
42
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
73.7
0.53
1
74.8
33.8
Minor 5ss
34.9
-1.7
3.3
47.5
41.6
Minor BPS
64.1
0.52
1.4
78.87
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025969
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025797
28970886 - 28973734
2849