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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_2897496_2964381_F

Intron Information:

Intron Rank:
148121
Intron Class:
major
Intron Phase:
Intron Coordinates:
2897496 - 2964381
Intron Length:
66886

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTATTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTAATTTTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.8
81.1
26.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.3
0.79
0.7
80.7
30.2
Minor 5ss
29.7
-2.3
2.6
30.1
36.9
Minor BPS
70.3
0.72
1.2
80.87
34.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029749
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040119
2897205 - 3125514
228310