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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_28981948_28983043_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
28981948 - 28983043
Intron Length:
1096

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAGGA
5'SS Class:
major
3'SS Sequence:
CGGCTCTTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGGTTAT
U12 Branch Point Sequence:
ATTGGGTTATTT
Flanking Amino Acid:
SKKSRVLTARTPCQQELDQV
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
62.1
38.7
Major BPS
49.3
-0
1.5
43.1
49.2
Major PPT
71.8
0.49
0.9
68.6
37.2
Minor 5ss
23.9
-3
3
20.9
37.5
Minor BPS
42.3
-0.5
2.5
65.41
45.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009817
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010226
28980238 - 28986639
6402