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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29063176_29064384_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29063176 - 29064384
Intron Length:
1209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGCGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTTCTATTACA
Flanking Amino Acid:
AKYTCSFCGKTKMKRKAVGI
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
0.9
63.9
42.4
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
90
0.9
0.7
84.9
28.3
Minor 5ss
25.7
-2.8
3.1
32.8
42.2
Minor BPS
62.6
0.39
1.9
80.4
34.9

Associated Gene:

Gene:
RPL37A
Ensembl Gene ID:
ENSAPLG00000009836
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010237
29062630 - 29064545
1916