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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29072680_29074911_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29072680 - 29074911
Intron Length:
2232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGT|GTAAGCTGC
5'SS Class:
major
3'SS Sequence:
CTCTTTCATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAT
U12 Branch Point Sequence:
TCCTCTTTCATA
Flanking Amino Acid:
RTAEAKIHSVVEYILELLES
Intron Amino Acid Position:
721

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.2
57
43.3
Major BPS
83.4
0.83
0.8
83.7
25.7
Major PPT
77.1
0.61
0.8
72.9
31
Minor 5ss
46.2
-0.4
2.8
59.8
45
Minor BPS
58
0.25
1.7
66.01
41.8

Associated Gene:

Gene:
SMARCAL1
Ensembl Gene ID:
ENSAPLG00000009864
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010292
29069455 - 29100854
31400
ENSAPLT00000036247
29069343 - 29100854
31512