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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29080331_29087292_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29080331 - 29087292
Intron Length:
6962

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TGTCTGATAAGG
Flanking Amino Acid:
RCRAAMPLLKAARRVILLSG
Intron Amino Acid Position:
600

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82
38.1
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
88.4
0.86
0.8
80.8
36.8
Minor 5ss
38.3
-1.3
3
50.7
45.8
Minor BPS
40.3
-0.8
2.4
49.99
43.8

Associated Gene:

Gene:
SMARCAL1
Ensembl Gene ID:
ENSAPLG00000009864
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036247
29069343 - 29100854
31512