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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29080331_29089116_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29080331 - 29089116
Intron Length:
8786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
TTTGCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TGTCTGATAAGG
Flanking Amino Acid:
LKNTFQVVIIAARRVILLSG
Intron Amino Acid Position:
578

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
76.5
38.6
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
88.4
0.86
0.8
80.8
36.8
Minor 5ss
40
-1.1
2.9
57.4
41.1
Minor BPS
40.3
-0.8
2.4
49.99
43.8

Associated Gene:

Gene:
SMARCAL1
Ensembl Gene ID:
ENSAPLG00000009864
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010292
29069455 - 29100854
31400