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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29087359_29089116_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29087359 - 29089116
Intron Length:
1758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
TGTTTTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTCATTTCAATT
Flanking Amino Acid:
LKNTFQVVIIDESHYLKNVK
Intron Amino Acid Position:
578

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
76.5
38.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
86.5
0.82
0.9
84.6
36
Minor 5ss
40
-1.1
2.9
57.4
41.1
Minor BPS
55.8
0.26
1.5
71.94
39.8

Associated Gene:

Gene:
SMARCAL1
Ensembl Gene ID:
ENSAPLG00000009864
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036247
29069343 - 29100854
31512