Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29089276_29092045_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29089276 - 29092045

Intron Length:

2770

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTACTGTAA

5'SS Class:

major

3'SS Sequence:

TCTTCTCCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGAAAT

U12 Branch Point Sequence:

ATGAAATTACTC

Flanking Amino Acid:

PSSVRFTWAEAFHRWLPSLR

Intron Amino Acid Position:

525

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.8

0.49

1.1

64.9

37.3

Major BPS

58.4

0.21

1.2

38.7

Major PPT

85.5

0.8

0.7

77.5

31.3

Minor 5ss

-1.7

3.4

46.8

48.5

Minor BPS

42.9

-0.5

1.9

51.71

39.2

Associated Gene:

Gene:

SMARCAL1

Ensembl Gene ID:

ENSAPLG00000009864

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000036247

29069343 - 29100854

31512

ENSAPLT00000010292

29069455 - 29100854

31400