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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29210198_29211070_R

Intron Information:

Intron Rank:
133772
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
29210198 - 29211070
Intron Length:
873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCACTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CCTACATTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
70.5
33.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
57.4
0.17
1.7
70.5
40
Minor 5ss
30.9
-2.2
3.3
36.6
41.5
Minor BPS
48.3
-0
1.9
65.3
45.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019222
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046553
29210126 - 29212260
2135