Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29233828_29238611_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

29233828 - 29238611

Intron Length:

4784

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATCATTT

5'SS Class:

weak_major

3'SS Sequence:

CTTGTATTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTAAC

U12 Branch Point Sequence:

GTCAGTCTAACT

Flanking Amino Acid:

SSVTSEEAEKFLAPKEKKNE

Intron Amino Acid Position:

698

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.6

0.53

1.2

74.2

37.1

Major BPS

0.45

0.9

67.6

25.3

Major PPT

84.1

0.77

0.8

81.1

35.5

Minor 5ss

69.3

0.65

2.3

82.5

37.1

Minor BPS

46.6

-0.1

2.1

65.88

44.6

Associated Gene:

Gene:

XRCC5

Ensembl Gene ID:

ENSAPLG00000012767

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020504

29232921 - 29278958

46038

ENSAPLT00000013354

29232921 - 29279900

46980

ENSAPLT00000046751

29232864 - 29277235

44372