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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29238680_29240718_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29238680 - 29240718
Intron Length:
2039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGATGG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATATCTTTTATT
Flanking Amino Acid:
LVDFWEIVVQDRISLITKDE
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
65.1
41.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
89.3
0.88
0.7
89
27.8
Minor 5ss
43.4
-0.7
2.8
56.2
48
Minor BPS
64.9
0.55
1.6
78.82
37.8

Associated Gene:

Gene:
XRCC5
Ensembl Gene ID:
ENSAPLG00000012767
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046751
29232864 - 29277235
44372
ENSAPLT00000020504
29232921 - 29278958
46038
ENSAPLT00000013354
29232921 - 29279900
46980