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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29241415_29247658_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29241415 - 29247658
Intron Length:
6244

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATGAC
5'SS Class:
major
3'SS Sequence:
CCTTGTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTTGCTTATTT
Flanking Amino Acid:
VRQKNADFKDVSQQLINRID
Intron Amino Acid Position:
606

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
70.9
33
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.4
0.75
0.8
80.3
31.8
Minor 5ss
32.5
-2
3.3
39.7
41.6
Minor BPS
59.8
0.39
2
80.47
41.8

Associated Gene:

Gene:
XRCC5
Ensembl Gene ID:
ENSAPLG00000012767
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020504
29232921 - 29278958
46038
ENSAPLT00000013354
29232921 - 29279900
46980
ENSAPLT00000046751
29232864 - 29277235
44372