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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29252880_29257113_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29252880 - 29257113
Intron Length:
4234

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAA
U12 Branch Point Sequence:
TTTGCTAAAATT
Flanking Amino Acid:
PNPHFQRLYQCLQHKAFHPN
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.8
33
Major BPS
70.1
0.5
1.1
69.9
35.3
Major PPT
89.2
0.88
0.7
84.2
30.9
Minor 5ss
31.9
-2.1
3
38.8
46.3
Minor BPS
50
0.08
2
76.08
41.4

Associated Gene:

Gene:
XRCC5
Ensembl Gene ID:
ENSAPLG00000012767
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020504
29232921 - 29278958
46038
ENSAPLT00000013354
29232921 - 29279900
46980
ENSAPLT00000046751
29232864 - 29277235
44372