Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29264257_29266189_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29264257 - 29266189

Intron Length:

1933

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTATGGCTC

5'SS Class:

strong_major

3'SS Sequence:

TCTTGTTCTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTTAC

U12 Branch Point Sequence:

ATATGCTTACCA

Flanking Amino Acid:

TEVQKDDTVQGFRYGSDIIP

Intron Amino Acid Position:

306

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

69.5

41.1

Major BPS

66.4

0.41

1.1

57.4

41.4

Major PPT

0.79

0.8

37.3

Minor 5ss

41.4

-1

3.3

58.6

46.2

Minor BPS

56.5

0.2

70.54

41.6

Associated Gene:

Gene:

XRCC5

Ensembl Gene ID:

ENSAPLG00000012767

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046751

29232864 - 29277235

44372

ENSAPLT00000020504

29232921 - 29278958

46038

ENSAPLT00000013354

29232921 - 29279900

46980