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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29266329_29268043_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29266329 - 29268043
Intron Length:
1715

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTTCT
5'SS Class:
major
3'SS Sequence:
TTCTTATATAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TGTTCCTTTACA
Flanking Amino Acid:
LSIRIVAYKSVTEEKVKKMW
Intron Amino Acid Position:
260

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
35
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
70.4
0.46
1.1
71.8
36.6
Minor 5ss
45
-0.5
2.8
65.4
39.4
Minor BPS
77.7
0.87
1.5
84.68
34.6

Associated Gene:

Gene:
XRCC5
Ensembl Gene ID:
ENSAPLG00000012767
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046751
29232864 - 29277235
44372
ENSAPLT00000020504
29232921 - 29278958
46038
ENSAPLT00000013354
29232921 - 29279900
46980