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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_292693_292923_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
292693 - 292923
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTATGTCGT
5'SS Class:
major
3'SS Sequence:
TTTTTTCCCCAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
TTTTTCCCCAAG
Flanking Amino Acid:
LGGEQIRNVASLGGNVVSRK
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.2
58.7
45.7
Major BPS
66.7
0.41
1
57.8
39
Major PPT
76.5
0.6
1
76.2
32.8
Minor 5ss
44.9
-0.5
2.9
68.3
42.4
Minor BPS
42.2
-0.7
2.3
57.32
43.9

Associated Gene:

Gene:
AOX1
Ensembl Gene ID:
ENSAPLG00000008708
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022758
264624 - 306968
42345
ENSAPLT00000018331
263911 - 307009
43099
ENSAPLT00000009339
268146 - 306968
38823
ENSAPLT00000045156
267812 - 306968
39157
ENSAPLT00000025359
264624 - 306968
42345