Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29273999_29279897_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

29273999 - 29279897

Intron Length:

5899

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTACATGCA

5'SS Class:

major

3'SS Sequence:

GTTTCCTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

ACATTCTTATTT

Flanking Amino Acid:

MAAIVLCLDVG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

68.6

0.44

1.1

61.2

37.5

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

81.6

0.71

0.8

73.8

36.8

Minor 5ss

31.4

-2.1

3.4

38.4

41.8

Minor BPS

59.2

0.37

1.6

70.41

41.1

Associated Gene:

Gene:

XRCC5

Ensembl Gene ID:

ENSAPLG00000012767

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013354

29232921 - 29279900

46980