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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29289205_29290902_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29289205 - 29290902
Intron Length:
1698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGTATC
5'SS Class:
strong_major
3'SS Sequence:
TCTGTGTTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATGAGTTTATCT
Flanking Amino Acid:
SKFLGQSSADGVWNMPLDSR
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
78.1
36.4
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
73.6
0.53
0.9
68.8
37.1
Minor 5ss
39.4
-1.2
3
50.9
40.1
Minor BPS
47.7
-0
2
66.57
44.4

Associated Gene:

Gene:
TMEM169
Ensembl Gene ID:
ENSAPLG00000012858
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013380
29288582 - 29298448
9867