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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29298584_29301531_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29298584 - 29301531
Intron Length:
2948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGGGCGGG
5'SS Class:
major
3'SS Sequence:
TCTGTCTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
GGATTTTTCATT
Flanking Amino Acid:
KAIAADLLALGCSVVIASRK
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
54
45.2
Major BPS
100
1.24
0.5
100
0
Major PPT
82.7
0.74
0.8
76.4
32.3
Minor 5ss
28.9
-2.4
3.5
37.3
47.4
Minor BPS
49.8
0.07
1.7
65.45
39.6

Associated Gene:

Gene:
PECR
Ensembl Gene ID:
ENSAPLG00000012862
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013410
29298469 - 29311757
13289