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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29306727_29307180_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29306727 - 29307180
Intron Length:
454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGACT
5'SS Class:
strong_major
3'SS Sequence:
CTCCTTCATACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCCTCCTTCATA
Flanking Amino Acid:
LTGTFYCCKAVYNAWMQKHG
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.5
0.88
0.8
81.2
32.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.6
0.62
0.8
72.2
31.4
Minor 5ss
29.5
-2.4
3.1
40.4
45.5
Minor BPS
63.9
0.43
1.8
70.44
42.7

Associated Gene:

Gene:
PECR
Ensembl Gene ID:
ENSAPLG00000012862
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013410
29298469 - 29311757
13289