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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29310894_29311402_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29310894 - 29311402
Intron Length:
509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTTATTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTCTTTTTATTA
Flanking Amino Acid:
PAKRSAVPEEISPVVCFLLS
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
77.6
33.1
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
83.6
0.76
0.8
85.6
27.4
Minor 5ss
38.5
-1.3
3.4
55.5
48.6
Minor BPS
61
0.34
1.5
69.82
37.7

Associated Gene:

Gene:
PECR
Ensembl Gene ID:
ENSAPLG00000012862
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013410
29298469 - 29311757
13289