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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29311515_29311627_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
29311515 - 29311627
Intron Length:
113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAG
U12 Branch Point Sequence:
CCTCCATCAACT
Flanking Amino Acid:
SLYRNTIEIPDHDRWPSPPE
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.9
1.03
0.7
89.8
22.3
Major BPS
54
0.1
1.4
61.7
34.1
Major PPT
85.5
0.8
0.7
84.9
29.9
Minor 5ss
35.1
-1.7
3.1
48.5
47.2
Minor BPS
52.4
0.16
1.9
71.07
45.3

Associated Gene:

Gene:
PECR
Ensembl Gene ID:
ENSAPLG00000012862
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013410
29298469 - 29311757
13289