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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29337995_29339873_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29337995 - 29339873
Intron Length:
1879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TTTTTGTTACAG
Flanking Amino Acid:
KPKSSSPKKQNDVRVKFEHR
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
88.3
0.86
0.8
83.2
31.9
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
47.5
-0.3
2.4
63.72
44.3

Associated Gene:

Gene:
MAP3K2
Ensembl Gene ID:
ENSAPLG00000012930
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013513
29334762 - 29363936
29175