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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29339915_29342408_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
29339915 - 29342408
Intron Length:
2494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TATTGTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
AATTCTCTAACT
Flanking Amino Acid:
RVKFEHRGEKRILQLPRPVK
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.7
43.7
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
80.4
0.68
1
77.2
41.6
Minor 5ss
43.2
-0.7
2.9
55.9
48.3
Minor BPS
69.5
0.69
1.6
84.62
35.3

Associated Gene:

Gene:
MAP3K2
Ensembl Gene ID:
ENSAPLG00000012930
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013513
29334762 - 29363936
29175