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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_29342509_29344320_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
29342509 - 29344320
Intron Length:
1812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATACTC
5'SS Class:
strong_major
3'SS Sequence:
ATCCTTTTTGTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTATTT
Flanking Amino Acid:
TMDLHYSNNELVIPLTTQDD
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
71.8
38.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.2
0.7
0.8
76.9
31
Minor 5ss
36.6
-1.5
3.2
51.3
45.2
Minor BPS
57.4
0.31
1.8
77.92
38.5

Associated Gene:

Gene:
MAP3K2
Ensembl Gene ID:
ENSAPLG00000012930
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013513
29334762 - 29363936
29175